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2 DAY IN-PERSON HANDS-ON TRAINING | MUMBAI

Computer Aided Drug Discovery using Python

Automate your Drug Discovery Pipeline

Intensive Learning

Hands-On Exercise

Interactive Sessions

Individual Practice

Introduction to Workshop

Computer Aided Drug Discovery using Python is transforming the way researchers develop new drugs, offering a powerful combination of computational techniques and programming tools to accelerate the drug discovery process. Python, with its extensive libraries and user-friendly syntax, has become a preferred language for bioinformatics and cheminformatics, driving innovation in the pharmaceutical industry.

In drug discovery, identifying potential drug candidates that can interact effectively with biological targets is a complex and time-consuming task. Python streamlines this process through its ability to handle large datasets, perform molecular modeling, and conduct virtual screenings. Libraries such as RDKit, PyMOL, and Open Babel allow researchers to visualize molecular structures, predict molecular properties, and simulate drug-target interactions efficiently.

Python’s versatility extends to machine learning and artificial intelligence, enabling the development of predictive models for drug activity, toxicity, and pharmacokinetics. By integrating these models into the drug discovery pipeline, researchers can prioritize compounds with the highest likelihood of success, reducing the time and cost associated with experimental testing.

Applications of Computer Aided Drug Discovery using Python

In this section we are discussing some of the potential areas of application of Computer Aided Drug Discovery using Python & how it can be helpful in these areas to carryout analysis.

Python is widely used to perform molecular docking simulations, where potential drug candidates are virtually “docked” into the binding site of a target protein.

Python facilitates virtual screening, where large libraries of compounds are rapidly evaluated to identify those with the highest potential for interacting with a target.

Python is used to develop QSAR models that predict the biological activity of chemical compounds based on their molecular structure.

Python is employed to predict the pharmacokinetic properties and ADMET (Absorption, Distribution, Metabolism, Excretion, and Toxicity) profiles of drug candidates.

Python enables de novo drug design, where entirely new chemical entities are generated and optimized in silico.

Different Types of Analysis

Majorly, there are 3 different types of analysis using Computer Aided Drug Discovery using Python so below we have tried to list them down to help you take better decision if this masterclass will be relevant for your learning and be helpful in your intended area of research.

Molecular Docking Analysis

Molecular docking analysis involves predicting the preferred orientation of a drug candidate when it binds to a target protein.

SAR Analysis

SAR analysis examines the relationship between the chemical structure of compounds and their biological activity.

ADMET Prediction and Analysis

Python tools & machine learning models are used to predict these properties, allowing researchers to assess a compound's suitability

Detailed Agenda of The Workshop

Another significant advantage of Computer Aided Drug Discovery using Python is its ability to automate repetitive tasks, such as data preprocessing, molecular docking, and result analysis. This automation not only improves efficiency but also minimizes human error, leading to more accurate and reliable outcomes.

DAY 1 

10:00 AM - 10:45 AM

Introduction to Molecular Docking & MD Simulation using Python

10:45 AM - 11:00 AM

Tea/Coffee & Stretching Break

11:00 AM - 01:00 PM

Python 101 for Beginners, Collecting & preparing the Data, Data Pre-Processing

01:00 PM - 01:45 PM

Lunch Break

01:45 PM - 03:30 PM

Using the processed data for running Molecular Docking, Generating the Visualization Plots,

03:30 PM - 03:45 PM

Tea/Coffee & Stretching Break

03:45 PM - 04:45 PM

Compiling the results, Analysing the Results, Interpreting the Outcomes.

04:45 PM - 05:30 PM

Q&A and Doubts Session

DAY 2

10:00 AM - 10:45 AM

Introduction to MD Simulation, Applications of Python for Running the Process.

10:45 AM - 11:00 AM

Tea/Coffee & Stretching Break

11:00 AM - 01:00 PM

Setting-up the Simulation System & Selecting the forcefield

01:00 PM - 01:45 PM

Lunch Break

01:45 PM - 03:30 PM

Running Equilibration & Energy Minimization of the simulation system

03:30 PM - 03:45 PM

Tea/Coffee & Stretching Break

03:45 PM - 04:45 PM

Running Main MD Run, generating trajectory plots for end-to-end distance

04:45 PM - 05:30 PM

Q&A and Doubts Session, Result Interpretation, Certificate Distribution

Take Away From The Workshop

Computer Aided Drug Discovery using Python is a game-changer in the pharmaceutical industry. Its ability to integrate computational tools with advanced analytics makes it an indispensable asset for accelerating the discovery of new, effective drugs, ultimately contributing to better healthcare outcomes.

Apart from the topics mentioned above there are a few extra things which you can take away from this bootcamp, which will be adding more value to your work

Introductory Documentation

An introductory theory document to help you better understand the subject will also be provided.

Trainers Slide Deck

After the completion of the session complete access to the trainers slide deck will also be provided

Access to Trainers Repo

We will also be providing a complete access to trainers repository so that you can use it as reference later

8+ Hours of Live Training

During the course of 3 days we will be have live8+ hourse of training sessions with the participants.

Guided Hands-On Exercises

Hands-On exercises are a must to better learn any technology and be able to reproduce it later.

Participation Certificate

A Participations certificate is a must after successfully completing the training as a sign of accomplishment.

Expected Outcomes of the Masterclass

After completing all the tasks of this masterclass all of our participants will be able to:

Identification of Promising Drug Candidates

One of the primary outcomes is the identification of potential drug candidates that show strong binding affinity and specificity for target proteins.

Optimization of Lead Compounds

Python facilitates the optimization of lead compounds by analyzing structure-activity relationships (SAR) and performing molecular dynamics simulations.

Prediction of Drug Efficacy and Safety

Python-based tools help predict the biological activity, efficacy, and safety profiles of drug candidates through QSAR models, ADMET predictions

Reduction in Drug Development Time and Costs

By automating and streamlining various aspects of the drug discovery process, Python significantly reduces the time and costs associated.

Registration Details

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Terms & Conditions

  1. All fee paid is not refundable so please read all the terms & conditions before making any payments. If you still have any doubts please contact us and confirm and then only make the payment.
  2. Participants need to bring their registration tickets along with a valid Institutional ID, then only they will be allowed to attend the session. Please reach out to our team in case of any exceptions.
  3. Please fill all your details in the form correctly as those details will  be used in your certificate as well.
  4. Participants need to bring their own computer (laptop) system for the program.
  5. The software tools and other required software tools will be provided from our side for the purpose of this program.
  6. Participants need to reach the venue and report 30 minutes prior to the start of the sessions.
  7. Participants need to wear masks all the time inside the premises and abide by the other rules at the premises. 
  8. Particpants need to attend all the sessions in order to be eligible for getting the certificate.
  9. Welcome email will be sent to all the participants with all the details related to the program. Please check your Inbox/Spam folder for the email. 
  10. All the details of the software installations and how to prepare your system for the Program will be shared with all the participants in the Welcome Email itself.

Contact Us

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